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Gephi forums •SVG export fails

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SVG export fails

https://www.forum-gephi.org/viewtopic.php?f=4&t=1714

Page 1 of 1

SVG export fails

Posted: 11 Mar 2012 03:07
by gephboardman
I can successfully export to PDF and to PNG, but when I try to export to SVG, I get a file of size 0, which also doesn't open with an SVG viewer. The output says it was written successfully, but when I open the file with an XML viewer, it is actually completely blank.

I'm running Ubuntu 11.10.

Also, I scoured pretty hard and haven't seen anyone else posting about this. Is there a way I can obtain and dump an error report here? I'd really love to help Gephi because this thing is awesome. =) But I also neeeed SVGs to produce sweet graphics.

Re: SVG export fails

Posted: 12 Mar 2012 01:02
by mbastian
Hi,

Is that something you get for every graph or specific to a particular dataset?

Can you look for the error log messages and post it here?
http://wiki.gephi.org/index.php/Trouble ... r_files.3F

Re: SVG export fails

Posted: 12 Mar 2012 04:58
by gephboardman
For me, it fails for all graphs.

I just fired up the LesMiserables.gexf that ships with, and I could not SVG export that, either.

There's a lot going on in the log, but this is what I get:

Code: Select all

-------------------------------------------------------------------------------
>Log Session: Sunday, March 11, 2012 10:47:33 PM CDT
>System Info: 
  Product Version         = Gephi 0.8 beta
  Operating System        = Linux version 3.0.0-16-generic-pae running on i386
  Java; VM; Vendor        = 1.6.0_26; Java HotSpot(TM) Server VM 20.1-b02; Sun Microsystems Inc.
  Runtime                 = Java(TM) SE Runtime Environment 1.6.0_26-b03
  Java Home               = /usr/lib/jvm/java-6-sun-1.6.0.26/jre
  System Locale; Encoding = en_US (gephi); UTF-8
  Home Directory          = /home/myname
  Current Directory       = /home/myname
  User Directory          = /home/myname/.gephi/dev
  Installation            = /usr/share/gephi/gephi
                            /usr/share/gephi/platform
  Boot & Ext. Classpath   = /usr/lib/jvm/java-6-sun-1.6.0.26/jre/lib/resources.jar:/usr/lib/jvm/java-6-sun-1.6.0.26/jre/lib/rt.jar:/usr/lib/jvm/java-6-sun-1.6.0.26/jre/lib/sunrsasign.jar:/usr/lib/jvm/java-6-sun-1.6.0.26/jre/lib/jsse.jar:/usr/lib/jvm/java-6-sun-1.6.0.26/jre/lib/jce.jar:/usr/lib/jvm/java-6-sun-1.6.0.26/jre/lib/charsets.jar:/usr/lib/jvm/java-6-sun-1.6.0.26/jre/lib/modules/jdk.boot.jar:/usr/lib/jvm/java-6-sun-1.6.0.26/jre/classes:/usr/lib/jvm/java-6-sun-1.6.0.26/jre/lib/ext/localedata.jar:/usr/lib/jvm/java-6-sun-1.6.0.26/jre/lib/ext/sunpkcs11.jar:/usr/lib/jvm/java-6-sun-1.6.0.26/jre/lib/ext/dnsns.jar:/usr/lib/jvm/java-6-sun-1.6.0.26/jre/lib/ext/sunjce_provider.jar
  Application Classpath   = /usr/share/gephi/platform/lib/boot.jar:/usr/share/gephi/platform/lib/org-openide-modules.jar:/usr/share/gephi/platform/lib/org-openide-util.jar:/usr/share/gephi/platform/lib/org-openide-util-lookup.jar:/usr/lib/jvm/java-6-sun/lib/dt.jar:/usr/lib/jvm/java-6-sun/lib/tools.jar
  Startup Classpath       = /usr/share/gephi/platform/core/org-openide-filesystems.jar:/usr/share/gephi/platform/core/core.jar:/usr/bin/../share/gephi/bin/../gephi/core/locale/core_gephi.jar
-------------------------------------------------------------------------------
WARNING [org.netbeans.core.startup.NbEvents]: The extension /usr/share/gephi/gephi/modules/ext/swingx-1.6.1.jar may be multiply loaded by modules: [/usr/share/gephi/gephi/modules/org-jdesktop-swingx.jar, /usr/share/gephi/gephi/modules/org-gephi-desktop-timeline.jar]; see: http://www.netbeans.org/download/dev/javadoc/org-openide-modules/org/openide/modules/doc-files/classpath.html#class-path
WARNING [org.netbeans.core.modules]: the modules [org.gephi.desktop.preview, org.gephi.lsg_generator, org.gephi.ui.exporter.plugin, org.gephi.ui.filters.plugin, org.gephi.ui.statistics.plugin] use org.jdesktop.layout which is deprecated: Use javax.swing.GroupLayout instead. (In form editor: select Form ... in Inspector; change Layout Generation Style to Standard Java 6 code.)
INFO [org.netbeans.core.startup.NbEvents]: Turning on modules:
	org.openide.util.lookup [8.8.1 20111204-unknown-revn]
	org.openide.util [8.15.1 20111204-unknown-revn]
	org.openide.modules [7.23.1 20111204-unknown-revn]
	org.openide.filesystems [7.47.1 20111204-unknown-revn]
	org.openide.awt [7.31.1 20111204-unknown-revn]
	org.netbeans.api.progress/1 [1.24.1 20111204-unknown-revn]
	org.openide.dialogs [7.20.1 20111204-unknown-revn]
	org.openide.nodes [7.21.1 20111204-unknown-revn]
	org.openide.windows [6.40.1 20111204-unknown-revn]
	org.netbeans.modules.editor.mimelookup/1 [1.22.1 20111204-unknown-revn]
	org.openide.text [6.37.1 20111204-unknown-revn]
	org.netbeans.swing.tabcontrol [1.25.1 20111204-unknown-revn]
	org.netbeans.swing.outline [1.14.1 20111204-unknown-revn]
	org.openide.explorer [6.35.1 20111204-unknown-revn]
	org.openide.actions [6.22.1 20111204-unknown-revn]
	org.netbeans.modules.queries/1 [1.23.1 20111204-unknown-revn]
	org.openide.loaders [7.21.1 20111204-unknown-revn]
	org.openide.io [1.27.1 20111204-unknown-revn]
	org.netbeans.swing.plaf [1.20.1 20111204-unknown-revn]
	org.netbeans.swing.dirchooser [1.1 120226]
	org.netbeans.api.annotations.common/1 [1.9.1 20111204-unknown-revn]
	org.netbeans.spi.quicksearch [1.10.1 20111204-unknown-revn]
	org.netbeans.bootstrap/1 [2.40.1 20111204-unknown-revn]
	org.netbeans.core.startup/1 [1.31.1 20111204-unknown-revn]
	org.netbeans.modules.settings/1 [1.31.1 20111204-unknown-revn]
	org.netbeans.modules.sendopts/2 [2.13.1 20111204-unknown-revn]
	org.netbeans.modules.progress.ui [1.16.1 20111204-unknown-revn]
	org.netbeans.modules.print [7.9.1 20111204-unknown-revn]
	org.netbeans.modules.keyring [1.6.1 20111204-unknown-revn]
	org.netbeans.core/2 [3.25.1 20111204-unknown-revn]
	org.netbeans.modules.options.api/1 [1.22.1 20111204-unknown-revn]
	org.netbeans.modules.options.keymap [1.14.1 20111204-unknown-revn]
	org.netbeans.libs.jna/1 [1.14.1 20111204-unknown-revn]
	org.netbeans.modules.masterfs/2 [2.32.1 20111204-unknown-revn]
	org.netbeans.modules.keyring.impl [1.3.1 20111204-unknown-revn]
	org.netbeans.modules.favorites/1 [1.25.1 20111204-unknown-revn]
	org.netbeans.modules.editor.mimelookup.impl/1 [1.14.1 20111204-unknown-revn]
	org.netbeans.modules.autoupdate.services [1.26.1 20111204-unknown-revn]
	org.netbeans.modules.autoupdate.ui [1.23.1 20111204-unknown-revn]
	org.netbeans.libs.junit4 [1.13 20111204-unknown-revn]
	org.netbeans.core.windows/2 [2.28.1 20111204-unknown-revn]
	org.netbeans.core.ui/1 [1.27.1 20111204-unknown-revn]
	org.netbeans.core.nativeaccess/1 [1.12.1 20111204-unknown-revn]
	org.netbeans.core.io.ui/1 [1.12.1 20111204-unknown-revn]
	org.joda.time [1.0 120226]
	org.jfree [1.0 120226]
	org.jdesktop.swingx [1.6.1 120226]
	org.jdesktop.layout/1 [1.17.1 20111204-unknown-revn]
	org.gephi.utils.longtask [0.8.0.2 120226]
	org.gephi.project.api [0.8.0.2 120226]
	org.gephi.graph.api [0.8.0.3 120226]
	org.gephi.data.attributes.api [0.8.0.6 120226]
	org.gephi.ui.propertyeditor [0.8.1 120226]
	org.gephi.layout.api [0.8.0.1 120226]
	org.gephi.dynamic.api [0.8.0.5 120226]
	org.gephi.layout.plugin [0.8.0.3 120226]
	org.icculus.chunky.gephigraphviz [1.0 111030]
	org.gephi.lib.javacsv [2.0 120226]
	org.gephi.utils [0.8.0.3 120226]
	org.gephi.datalab.api [0.8.0.10 120226]
	org.gephi.visualization.api [0.8.0.1 120226]
	org.gephi.tools.api [0.8.0.1 120226]
	org.gephi.lib.validation [0.4 120226]
	org.gephi.ui.utils [0.8 120226]
	org.gephi.lib.gleem [1.0 120226]
	org.gephi.lib.jogl [1.1.0.2 120226]
	org.gephi.utils.collection [0.8.0.1 120226]
	org.gephi.lib.flamingo [5.0.1 120226]
	org.gephi.lib.commons.codec [1.4 120226]
	org.gephi.ui.components [0.8.0.6 120226]
	org.gephi.lib.commonscompress [1.1 120226]
	org.gephi.io.database.drivers [0.8.0.3 120226]
	org.gephi.io.importer.api [0.8.0.3 120226]
	org.gephi.desktop.mrufiles.api [0.8 120226]
	org.gephi.desktop.project [0.8.0.1 120226]
	org.gephi.visualization [0.8.0.7 120226]
	org.gephi.ui.workspace [0.8.1.0 120226]
	org.gephi.ui.upgrader [0.8 120226]
	org.gephi.statistics.api [0.8.1.1 120226]
	org.gephi.statistics.plugin [0.8.0.6 120226]
	org.gephi.ui.statistics.plugin [0.8.0.3 120226]
	org.gephi.lib.jcalendar [1.0 120226]
	org.gephi.lib.javamail [1.0 120226]
	org.gephi.io.spigot.plugin [0.8.0.1 120226]
	org.gephi.ui.spigot.plugin [0.8 120226]
	org.gephi.ranking.api [0.8.1.2 120226]
	org.gephi.ranking.plugin [0.8.1.1 120226]
	org.gephi.ui.ranking.plugin [0.8.1.1 120226]
	org.gephi.ui.project [0.8 120226]
	org.gephi.lib.beansbinding [1.2.1 120226]
	org.gephi.io.processor.plugin [0.8 120226]
	org.gephi.ui.processor.plugin [0.8 120226]
	org.gephi.partition.api [0.8 120226]
	org.gephi.partition.plugin [0.8 120226]
	org.gephi.ui.partition.plugin [0.8 120226]
	org.gephi.io.importer.plugin [0.8.0.6 120226]
	org.gephi.ui.importer.plugin [0.8.0.2 120226]
	org.gephi.io.generator.api [0.8 120226]
	org.gephi.io.generator.plugin [0.8.0.1 120226]
	org.gephi.ui.generator.plugin [0.8 120226]
	org.gephi.timeline [0.8.1.2 120226]
	org.gephi.filters.api [0.8.0.3 120226]
	org.gephi.filters.plugin [0.8.0.5 120226]
	org.gephi.ui.filters.plugin [0.8.0.3 120226]
	org.gephi.lib.itext [5.0.1 120226]
	org.gephi.io.exporter.api [0.8 120226]
	org.gephi.lib.batik [1.7 120226]
	org.gephi.lib.processing [1.5.1 120226]
	org.gephi.preview.api [0.8.1.5 120226]
	org.gephi.io.exporter.preview [0.8.0.4 120226]
	org.gephi.ui.exporter.preview [0.8.0.1 120226]
	org.gephi.lib.staxutils [1.0 120226]
	org.gephi.io.exporter.plugin [0.8.0.5 120226]
	org.gephi.ui.exporter.plugin [0.8.0.4 120226]
	org.gephi.lib.timing [1.1 120226]
	org.gephi.ui.components.SplineEditor [0.8.0.1 120226]
	org.gephi.algorithms [0.8.0.1 120226]
	org.gephi.perspective.api [0.8 120226]
	org.gephi.desktop.perspective [0.8.2 120226]
	org.gephi.tools.plugin [0.8.0.3 120226]
	org.gephi.recast_manipulator [1.0 120228]
	org.gephi.preview.plugin [0.8.1.3 120226]
	org.gephi.desktop.io.export [0.8.0.1 120226]
	org.gephi.plugins.seadragon [0.3.1 111019]
	org.gephi.plugins.seadragon.ui [0.3 111010]
	org.gephi.plugins.seadragonweb [0.3.1 111019]
	org.gephi.plugins.layout.noverlap [1.3 110422]
	org.gephi.plugins.layout.geo [1.0.3 111001]
	org.gephi.parallelForceAtlas [0.2 110724]
	org.gephi.lsg_generator [1.1 120204]
	org.gephi.layout.plugin.openord [0.4 110223]
	org.gephi.layout.plugin.coordinateviewplugin [1.0 111114]
	org.gephi.layout.plugin.circularlayout [0.6 110624]
	org.gephi.graph.dhns [0.8.0.5 120226]
	org.gephi.filters [0.8.0.3 120226]
	org.gephi.dynamic [0.8.0.4 120226]
	org.gephi.desktop.welcome [0.8.0.1 120226]
	org.gephi.desktop.tools [0.8.0.3 120226]
	org.gephi.desktop.timeline [0.8.1.1 120226]
	org.gephi.desktop.statistics [0.8.1.2 120226]
	org.gephi.desktop.spigot [0.8 120226]
	org.gephi.desktop.recentfiles [1.0.1 120226]
	org.gephi.desktop.ranking [0.8.1.2 120226]
	org.gephi.desktop.progress [0.8.0.3 120226]
	org.gephi.desktop.preview [0.8.1.3 120226]
	org.gephi.desktop.partition [0.8 120226]
	org.gephi.desktop.layout [0.8.0.4 120226]
	org.gephi.desktop.importer [0.8.0.1 120226]
	org.gephi.desktop.hierarchy [0.8 120226]
	org.gephi.desktop.generate [0.8 120226]
	org.gephi.desktop.filters [0.8.0.1 120226]
	org.gephi.desktop.datalab [0.8.0.8 120226]
	org.gephi.desktop.context [0.8 120226]
	org.gephi.clustering.api [0.8 120226]
	org.gephi.desktop.clustering [0.8 120226]
	org.gephi.datalab.plugin [0.8.0.9 120226]
	org.gephi.data.attributes [0.8.0.3 120226]
	org.gephi.clustering.plugin [0.8 120226]
	org.gephi.branding.desktop [0.8.0.6 120226]
	cz.cvut.fit.gephi.layeredlayout [0.1.3 111119]
	ch.ethz.sg.cuttlefish.ARFLayout [1.0 111203]
Current Version is gephi
20ms
0ms
0ms
Diagnostic information
Input arguments:
	-Djdk.home=/usr/lib/jvm/java-6-sun
	-Djava.library.path=/usr/lib/jni
	-Dnetbeans.system_http_proxy=DIRECT
	-Dnetbeans.system_http_non_proxy_hosts=
	-Dnetbeans.dirs=/usr/bin/../share/gephi/bin/../gephi:
	-Dnetbeans.home=/usr/share/gephi/platform
	-Xms512m
	-Xmx1024m
	-Dsun.java2d.noddraw=true
	-Dsun.awt.noerasebackground=true
	-Dnetbeans.indexing.noFileRefresh=true
	-XX:+HeapDumpOnOutOfMemoryError
	-XX:HeapDumpPath=/home/myname/.gephi/dev/var/log/heapdump.hprof
Compiler: HotSpot Tiered Compilers
Heap memory usage: initial 512.0MB maximum 910.2MB
Non heap memory usage: initial 18.2MB maximum 112.0MB
Garbage collector: PS Scavenge (Collections=0 Total time spent=0s)
Garbage collector: PS MarkSweep (Collections=0 Total time spent=0s)
Classes: loaded=4367 total loaded=4367 unloaded 0
INFO [org.netbeans.core.ui.warmup.DiagnosticTask]: Total memory 3,938,091,008
INFO [null]: Total physical memory 3,938,091,008
WARNING [org.openide.filesystems.Ordering]: Not all children in Menu/Window/ marked with the position attribute: [TimelineAction.shadow], but some are: [ClusteringAction.shadow, ContextAction.shadow, DataTableAction.shadow, FiltersAction.shadow, GraphAction.shadow, HierarchyAction.shadow, LayoutAction.shadow, PartitionAction.shadow, PreviewAction.shadow, PreviewSettingsAction.shadow, RankingAction.shadow, StatisticsAction.shadow, WelcomeAction.shadow, Separator3.instance, CloseWindowAction.shadow, MaximizeWindowAction.shadow, org-netbeans-core-windows-actions-UndockAction.shadow, Separator4.instance, Separator4_1.instance]
WARNING [org.netbeans.modules.autoupdate.updateproviders.AutoupdateCatalogFactory]: Services/AutoupdateType/org_gephi_branding_desktop_update_center.instance: url_key attribute deprecated in favor of url
WARNING [org.netbeans.modules.autoupdate.updateproviders.AutoupdateCatalogFactory]: Services/AutoupdateType/org_gephi_branding_desktop_update_center_1.instance: url_key attribute deprecated in favor of url
INFO [org.netbeans.JarClassLoader]: Cannot open /usr/share/gephi/gephi/modules/ext/postgresql-9.1-901.jdbc4.jar
java.util.zip.ZipException: error in opening zip file
	at java.util.zip.ZipFile.open(Native Method)
	at java.util.zip.ZipFile.<init>(ZipFile.java:127)
	at java.util.jar.JarFile.<init>(JarFile.java:135)
	at java.util.jar.JarFile.<init>(JarFile.java:114)
	at org.netbeans.JarClassLoader$JarSource$1.call(Unknown Source)
	at org.netbeans.JarClassLoader$JarSource$1.call(Unknown Source)
	at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
	at java.util.concurrent.FutureTask.run(FutureTask.java:138)
[catch] at org.netbeans.JarClassLoader$JarSource.getJarFile(Unknown Source)
	at org.netbeans.JarClassLoader$JarSource.resource(Unknown Source)
	at org.netbeans.Archive.getData(Unknown Source)
	at org.netbeans.JarClassLoader$JarSource.doGetResource(Unknown Source)
	at org.netbeans.JarClassLoader$Source.getResource(Unknown Source)
	at org.netbeans.JarClassLoader.findResource(Unknown Source)
	at org.netbeans.ProxyClassLoader.getResourceImpl(Unknown Source)
	at org.netbeans.ModuleManager$SystemClassLoader.getResourceImpl(Unknown Source)
	at org.netbeans.ProxyClassLoader.getResource(Unknown Source)
	at java.lang.ClassLoader.getResourceAsStream(ClassLoader.java:1192)
	at org.netbeans.ModuleManager$SystemClassLoader.getResourceAsStream(Unknown Source)
	at javax.xml.stream.SecuritySupport$4.run(SecuritySupport.java:96)
	at java.security.AccessController.doPrivileged(Native Method)
	at javax.xml.stream.SecuritySupport.getResourceAsStream(SecuritySupport.java:89)
	at javax.xml.stream.FactoryFinder.findJarServiceProvider(FactoryFinder.java:260)
	at javax.xml.stream.FactoryFinder.find(FactoryFinder.java:233)
	at javax.xml.stream.XMLInputFactory.newInstance(XMLInputFactory.java:123)
	at org.gephi.project.io.LoadTask.run(Unknown Source)
	at org.gephi.desktop.project.ProjectControllerUIImpl$6.run(Unknown Source)
	at org.gephi.utils.longtask.api.LongTaskExecutor$RunningLongTask.run(Unknown Source)
	at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441)
	at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
	at java.util.concurrent.FutureTask.run(FutureTask.java:138)
	at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
	at java.lang.Thread.run(Thread.java:662)
INFO [org.netbeans.JarClassLoader]: Cannot open /usr/share/gephi/gephi/modules/ext/mysql-connector-java-5.1.18-bin.jar
java.util.zip.ZipException: error in opening zip file
	at java.util.zip.ZipFile.open(Native Method)
	at java.util.zip.ZipFile.<init>(ZipFile.java:127)
	at java.util.jar.JarFile.<init>(JarFile.java:135)
	at java.util.jar.JarFile.<init>(JarFile.java:114)
	at org.netbeans.JarClassLoader$JarSource$1.call(Unknown Source)
	at org.netbeans.JarClassLoader$JarSource$1.call(Unknown Source)
	at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
	at java.util.concurrent.FutureTask.run(FutureTask.java:138)
[catch] at org.netbeans.JarClassLoader$JarSource.getJarFile(Unknown Source)
	at org.netbeans.JarClassLoader$JarSource.resource(Unknown Source)
	at org.netbeans.Archive.getData(Unknown Source)
	at org.netbeans.JarClassLoader$JarSource.doGetResource(Unknown Source)
	at org.netbeans.JarClassLoader$Source.getResource(Unknown Source)
	at org.netbeans.JarClassLoader.findResource(Unknown Source)
	at org.netbeans.ProxyClassLoader.getResourceImpl(Unknown Source)
	at org.netbeans.ModuleManager$SystemClassLoader.getResourceImpl(Unknown Source)
	at org.netbeans.ProxyClassLoader.getResource(Unknown Source)
	at java.lang.ClassLoader.getResourceAsStream(ClassLoader.java:1192)
	at org.netbeans.ModuleManager$SystemClassLoader.getResourceAsStream(Unknown Source)
	at javax.xml.stream.SecuritySupport$4.run(SecuritySupport.java:96)
	at java.security.AccessController.doPrivileged(Native Method)
	at javax.xml.stream.SecuritySupport.getResourceAsStream(SecuritySupport.java:89)
	at javax.xml.stream.FactoryFinder.findJarServiceProvider(FactoryFinder.java:260)
	at javax.xml.stream.FactoryFinder.find(FactoryFinder.java:233)
	at javax.xml.stream.XMLInputFactory.newInstance(XMLInputFactory.java:123)
	at org.gephi.project.io.LoadTask.run(Unknown Source)
	at org.gephi.desktop.project.ProjectControllerUIImpl$6.run(Unknown Source)
	at org.gephi.utils.longtask.api.LongTaskExecutor$RunningLongTask.run(Unknown Source)
	at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441)
	at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
	at java.util.concurrent.FutureTask.run(FutureTask.java:138)
	at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
	at java.lang.Thread.run(Thread.java:662)
java.lang.IllegalArgumentException: Non integer input value: 0.0
	at org.netbeans.beaninfo.editors.WrappersEditor.setAsText(Unknown Source)
	at org.netbeans.beaninfo.editors.IntegerEditor.setAsText(Unknown Source)
	at org.gephi.preview.api.PreviewPreset.deserialize(Unknown Source)
	at org.gephi.desktop.preview.PresetUtils.readXML(Unknown Source)
	at org.gephi.desktop.preview.PresetUtils.loadPresets(Unknown Source)
	at org.gephi.desktop.preview.PresetUtils.getPresets(Unknown Source)
	at org.gephi.desktop.preview.PreviewUIControllerImpl.getUserPresets(Unknown Source)
	at org.gephi.desktop.preview.PreviewSettingsTopComponent.setup(Unknown Source)
	at org.gephi.desktop.preview.PreviewSettingsTopComponent.propertyChange(Unknown Source)
	at org.gephi.desktop.preview.PreviewUIControllerImpl.fireEvent(Unknown Source)
	at org.gephi.desktop.preview.PreviewUIControllerImpl.access$500(Unknown Source)
	at org.gephi.desktop.preview.PreviewUIControllerImpl$1.select(Unknown Source)
	at org.gephi.project.impl.ProjectControllerImpl.fireWorkspaceEvent(Unknown Source)
	at org.gephi.project.impl.ProjectControllerImpl.openProject(Unknown Source)
	at org.gephi.project.io.LoadTask.run(Unknown Source)
	at org.gephi.desktop.project.ProjectControllerUIImpl$6.run(Unknown Source)
	at org.gephi.utils.longtask.api.LongTaskExecutor$RunningLongTask.run(Unknown Source)
	at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441)
	at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
	at java.util.concurrent.FutureTask.run(FutureTask.java:138)
	at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
	at java.lang.Thread.run(Thread.java:662)
Caused by: org.netbeans.core.UIExceptions$AnnException: Non integer input value: 0.0
	at org.netbeans.core.UIExceptions$AnnException.findOrCreate(Unknown Source)
	at org.netbeans.core.UIExceptions.annotateUser(Unknown Source)
	... 23 more
Caused by: 
INFO [org.netbeans.core.ui.focus]: External Changes Refresh on focus gain disabled
SEVERE [global]
java.lang.IllegalStateException: A task is still executing
	at org.gephi.utils.longtask.api.LongTaskExecutor.execute(Unknown Source)
	at org.gephi.desktop.io.export.DesktopExportController.exportFile(Unknown Source)
	at org.gephi.desktop.io.export.api.VectorialFileExporterUI.action(Unknown Source)
	at org.gephi.desktop.preview.PreviewSettingsTopComponent$3.actionPerformed(Unknown Source)
	at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1995)
	at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2318)
	at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387)
	at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242)
	at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:236)
	at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:272)
	at java.awt.Component.processMouseEvent(Component.java:6288)
	at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
	at java.awt.Component.processEvent(Component.java:6053)
	at java.awt.Container.processEvent(Container.java:2041)
	at java.awt.Component.dispatchEventImpl(Component.java:4651)
	at java.awt.Container.dispatchEventImpl(Container.java:2099)
	at java.awt.Component.dispatchEvent(Component.java:4481)
	at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4577)
	at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4238)
	at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4168)
	at java.awt.Container.dispatchEventImpl(Container.java:2085)
	at java.awt.Window.dispatchEventImpl(Window.java:2478)
	at java.awt.Component.dispatchEvent(Component.java:4481)
	at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:643)
	at java.awt.EventQueue.access$000(EventQueue.java:84)
	at java.awt.EventQueue$1.run(EventQueue.java:602)
	at java.awt.EventQueue$1.run(EventQueue.java:600)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
	at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
	at java.awt.EventQueue$2.run(EventQueue.java:616)
	at java.awt.EventQueue$2.run(EventQueue.java:614)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
	at java.awt.EventQueue.dispatchEvent(EventQueue.java:613)
	at org.netbeans.core.TimableEventQueue.dispatchEvent(Unknown Source)
[catch] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:269)
	at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:184)
	at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:174)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:169)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:161)
	at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
Is any of this relevant, or should I look somewhere else?

Re: SVG export fails

Posted: 12 Mar 2012 07:32
by mbastian
Thanks for the log. This is useful You have weird errors on opening a module's JAR. How did you install Gephi? Can you try to clean the gephi userdir and see if it fixed it?

Re: SVG export fails

Posted: 12 Mar 2012 17:47
by gephboardman
The first way I installed it was by using the testing build PPA. At the time, I also had OpenJDK instead of Sun.

So, I followed the uninstall directions and...

1. Cleaned out my user folder, deleted it and all contents.
2. Installed the supported Sun JDK (and set it as the default java javac etc)
3. Removed the ppa:rockclimb/gephi-testing ppa
4. Reinstalled from the downloads page.

I did the uninstall reinstall dance a few more times, but still have the SVG problem.

I googled around for similar error messages, do you think any of these are related?
http://stackoverflow.com/questions/9553 ... ing-python
http://forums.netbeans.org/post-86717.html&highlight=
http://stackoverflow.com/questions/6493 ... l-the-time
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